Installs 425 bioinformatics skills covering sequence analysis, RNA-seq, single-cell, variant calling, metagenomics, structural biology, and 56 more categories. Use when setting up bioinformatics capabilities or when a bioinformatics task requires specialized skills not yet installed.
Follow the repository instructions for this skill and your agent. Review the files and dependencies before adding it to your workflow.
SkillHub CLI
skillhub install djemec/bioskillsInspect the source and compatibility requirements, then follow its installation steps.
Give your agent the source link and ask it to inspect instructions and dependencies before explaining the installation steps.
Meta-skill that installs the full bioSkills collection (425 skills across 62 categories) for bioinformatics analysis.
Run the bundled install script to download and install all bioSkills:
bash scripts/install-bioskills.sh
Or install only specific categories:
bash scripts/install-bioskills.sh --categories "single-cell,variant-calling,differential-expression"
| Category Group | Categories | Skills |
|---|---|---|
| Sequence & Alignment | sequence-io, sequence-manipulation, alignment, alignment-files, database-access | 40 |
| Read Processing | read-qc, read-alignment | 11 |
| RNA-seq & Expression | differential-expression, rna-quantification, expression-matrix | 14 |
| Single-Cell & Spatial | single-cell, spatial-transcriptomics | 25 |
| Variant Analysis | variant-calling, copy-number, phasing-imputation | 21 |
| Epigenomics | chip-seq, atac-seq, methylation-analysis, hi-c-analysis | 25 |
| Metagenomics & Microbiome | metagenomics, microbiome | 13 |
| Genomics & Assembly | genome-assembly, genome-annotation, genome-intervals, genome-engineering, primer-design | 29 |
| Regulatory & Causal | gene-regulatory-networks, causal-genomics, rna-structure | 13 |
| Temporal & Ecological | temporal-genomics, ecological-genomics | 11 |
| Immunology & Clinical | immunoinformatics, clinical-databases, tcr-bcr-analysis, epidemiological-genomics | 25 |
| Specialized Omics | proteomics, metabolomics, alternative-splicing, chemoinformatics, liquid-biopsy | 36 |
| RNA Biology | small-rna-seq, epitranscriptomics, clip-seq, ribo-seq | 20 |
| Phylogenetics & Evolution | phylogenetics, population-genetics, comparative-genomics | 16 |
| Structural & Systems | structural-biology, systems-biology | 11 |
| Screens & Cytometry | crispr-screens, flow-cytometry, imaging-mass-cytometry | 22 |
| Pathway & Integration | pathway-analysis, multi-omics-integration, restriction-analysis | ... |
These signals come from indexed source analysis and may lag behind changes. Check the current source files.
# bioSkills Installer Meta-skill that installs the full bioSkills collection (425 skills across 62 categories) for bioinformatics analysis. ## Installation Run the bundled install script to download and install all bioSkills: ```bash bash scripts/install-bioskills.sh ``` Or install only specific categories: ```bash bash scripts/install-bioskills.sh --categories "single-cell,variant-calling,differential-expression" ``` ## What Gets Installed | Category Group | Categories | Skills | |----------------|-----------|--------| | Sequence & Alignment | sequence-io, sequence-manipulation, alignment, alignment-files, database-access | 40 | | Read Processing | read-qc, read-alignment | 11 | | RNA-seq & Expression | differential-expression, rna-quantification, expression-matrix | 14 | | Single-Cell & Spatial | single-cell, spatial-transcriptomics | 25 | | Variant Analysis | variant-calling, copy-number, phasing-imputation | 21 | | Epigenomics | chip-seq, atac-seq, methylation-analysis, hi-c-analysis | 25 | | Metagenomics & Microbiome | metagenomics, microbiome | 13 | | Genomics & Assembly | genome-assembly, genome-annotation, genome-intervals, genome-engineering, primer-design | 29 | | Regulatory & Causal | gene-regulatory-networks, causal-genomics, rna-structure | 13 | | Temporal & Ecological | temporal-genomics, ecological-genomics | 11 | | Immunology & Clinical | immunoinformatics, clinical-databases, tcr-bcr-analysis, epidemiological-genomics | 25 | | Specialized Omics | proteomics, metabolomics, alternative-splicing, chemoinformatics, liquid-biopsy | 36 | | RNA Biology | small-rna-seq, epitranscriptomics, clip-seq, ribo-seq | 20 | | Phylogenetics & Evolution | phylogenetics, population-genetics, comparative-genomics | 16 | | Structural & Systems | structural-biology, systems-biology | 11 | | Screens & Cytometry | crispr-screens, flow-cytometry, imaging-mass-cytometry | 22 | | Pathway & Integration | pathway-analysis, multi-omics-integration, restriction-analysis |...
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