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bio-workflows-microbiome-pipeline

maintained by GPTomics

star 300 account_tree 51 verified_user MIT License
bolt View GitHub
Overview Implementation Examples History

End-to-end 16S amplicon workflow from FASTQ reads to differential abundance. Orchestrates DADA2 ASV inference, taxonomy assignment, diversity analysis, and compositional testing with ALDEx2.

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Skill Details

GitHub Stars 300
GitHub Forks 51
Created Jan 2026
Last Updated 5 months ago
tools tools bioinformatics

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