80,000+ Skills to Supercharge Claude
The open directory for GitHub-integrated capabilities, tools, and prompts for your AI workflows.
cellxgene-census
by K-Dense-AI
Query the CELLxGENE Census (61M+ cells) programmatically. Use when you need expression data across tissues, diseases, or...
seaborn
by K-Dense-AI
Statistical visualization with pandas integration. Use for quick exploration of distributions, relationships, and catego...
deeptools
by K-Dense-AI
NGS analysis toolkit. BAM to bigWig conversion, QC (correlation, PCA, fingerprints), heatmaps/profiles (TSS, peaks), for...
pufferlib
by K-Dense-AI
High-performance reinforcement learning framework optimized for speed and scale. Use when you need fast parallel trainin...
statsmodels
by K-Dense-AI
Statistical models library for Python. Use when you need specific model classes (OLS, GLM, mixed models, ARIMA) with det...
zarr-python
by K-Dense-AI
Chunked N-D arrays for cloud storage. Compressed arrays, parallel I/O, S3/GCS integration, NumPy/Dask/Xarray compatible,...
pyopenms
by K-Dense-AI
Complete mass spectrometry analysis platform. Use for proteomics workflows feature detection, peptide identification, pr...
diffdock
by K-Dense-AI
Diffusion-based molecular docking. Predict protein-ligand binding poses from PDB/SMILES, confidence scores, virtual scre...
geo-database
by K-Dense-AI
Access NCBI GEO for gene expression/genomics data. Search/download microarray and RNA-seq datasets (GSE, GSM, GPL), retr...
pydicom
by K-Dense-AI
Python library for working with DICOM (Digital Imaging and Communications in Medicine) files. Use this skill when readin...
exploratory-data-analysis
by K-Dense-AI
Perform comprehensive exploratory data analysis on scientific data files across 200+ file formats. This skill should be...
drugbank-database
by K-Dense-AI
Access and analyze comprehensive drug information from the DrugBank database including drug properties, interactions, ta...
biorxiv-database
by K-Dense-AI
Efficient database search tool for bioRxiv preprint server. Use this skill when searching for life sciences preprints by...
metabolomics-workbench-da...
by K-Dense-AI
Access NIH Metabolomics Workbench via REST API (4,200+ studies). Query metabolites, RefMet nomenclature, MS/NMR data, m/...
hypothesis-generation
by K-Dense-AI
Structured hypothesis formulation from observations. Use when you have experimental observations or data and need to for...
clinicaltrials-database
by K-Dense-AI
Query ClinicalTrials.gov via API v2. Search trials by condition, drug, location, status, or phase. Retrieve trial detail...
aeon
by K-Dense-AI
This skill should be used for time series machine learning tasks including classification, regression, clustering, forec...
pdb-database
by K-Dense-AI
Access RCSB PDB for 3D protein/nucleic acid structures. Search by text/sequence/structure, download coordinates (PDB/mmC...
brenda-database
by K-Dense-AI
Access BRENDA enzyme database via SOAP API. Retrieve kinetic parameters (Km, kcat), reaction equations, organism data, a...
vaex
by K-Dense-AI
Use this skill for processing and analyzing large tabular datasets (billions of rows) that exceed available RAM. Vaex ex...
paper-2-web
by K-Dense-AI
This skill should be used when converting academic papers into promotional and presentation formats including interactiv...
markitdown
by K-Dense-AI
Convert files and office documents to Markdown. Supports PDF, DOCX, PPTX, XLSX, images (with OCR), audio (with transcrip...
neuropixels-analysis
by K-Dense-AI
Neuropixels neural recording analysis. Load SpikeGLX/OpenEphys data, preprocess, motion correction, Kilosort4 spike sort...
research-grants
by K-Dense-AI
Write competitive research proposals for NSF, NIH, DOE, DARPA, and Taiwan NSTC. Agency-specific formatting, review crite...